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SRX4948881: RNA-seq of Tricholomella constricta on full media: mycelium: replicate 3
1 ILLUMINA (Illumina HiSeq 2500) run: 19.2M spots, 4.8G bases, 1.7Gb downloads

Design: The mycelium was collected from liquid cultures containing malt 2%. Total RNA was extracted using RNeasy mini Qiagen kit. Illumina HiSeq 2500 was done with a 2x126 setup using 'HiSeq SBS Kit v4' chemistry. The Bcl to FastQ conversion was performed using None from the CASAVA software suite. The quality scale used is Sanger / phred33 / Illumina 1.8+
Submitted by: Lund University
Study: Tricholomella constricta strain:CBS 661.87 Genome sequencing and assembly
show Abstracthide Abstract
The aim of the study was to sequence the genomes of selected litter decomposers from Agaricales, representing the Agaricoid, Marasmioid and Tricholomatoid clades. The comparison of those genomes with other published genomes of mushroom forming fungi aims to: a) to reveal the strategies involved in the decomposition of organic matter and particularly of the plant cell wall, b) to understand the differences in the strategies used between litter and wood decomposers, c) shed light into the evolutionary processes that have shaped those strategies as seen in extant members of Agaricales.
Sample:
SAMN10245927 • SRS3991100 • All experiments • All runs
Library:
Name: TRC661.87_RS_ME_S3
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: PolyA
Layout: PAIRED
Runs: 1 run, 19.2M spots, 4.8G bases, 1.7Gb
Run# of Spots# of BasesSizePublished
SRR812766219,235,9434.8G1.7Gb2020-05-08

ID:
6677057

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